miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|224270294|gb|GH651475.1|GH651475 CCTTCAAATACAAGGTTTTAGCAGAAATGTTCCGCAGTATGGACACCATCGTCGGCATGCTCTTCAACCGCTTGGAAACC
GTCACCTTCGCCAAAGTCAAACAAGGAGTCCAGGACATGATGCACAAGCGTTTTGAAGAGTCTCACGTAGGACAGATTAA
GACGGTGTACCCATCCGCCTACACCTTAAGGCAGGAGAAAAACATCCCGACCTTCAGCGCTACAGTGAAGAAATCCACCT
ACCAGCTCACTGTGGAGCCGCTCATCGAAGAAGAAACAAACGGCGCCCGCCCCGTCCTGTCGGCTACTCGTCTGCTGGAG
AGAAGACGCGCGTTTCATCAGAACCTGCTGGAAATCGTGAAGGGACACCATAAGGTGTTCCTAGCTTCGTTGAGCCCTCC
TTTAGTGGTCCCTGATGATAAACTAACTCGTTGGCATCCCAAATTCAACGTGGACGAGGTGCCCAACATCCTGCCCAGCG
ACTTGCCTCAGCCTCCACAGACGGAGAAACTCACCACTGCTCAGGAAGTGTTGGACAGAGCTCGCTCCCTCATGACCCCT
AAGATGGAGAAGGCTTTGGCTAACATGGCCTTAAAAACAGCAGAGGCAGCTTGTTCAAAAGCGAGCGAGACACCAGTAAA
ACCAGCTGTGATGCCCATCCAGACCTCCAGTGCCCTCAAAGGAGTGTCCCAGTCTCTGCTGGAGAGGATCCGAGCTAAAG
AGGCTCAGAAACTGCAAGCAGCAATGACGCGGAATCCCGA




Most similar to sp|Q9I9A7|CDT1_XENLA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9I9A7|CDT1_XENLA DNA replication factor Cdt1 OS=Xenopus laevis
            GN=cdt1 PE=1 SV=2
          Length = 617

 Score =  346 bits (888), Expect = 9e-95
 Identities = 178/254 (70%), Positives = 210/254 (82%), Gaps = 2/254 (0%)
 Frame = +3

Query: 3    FKYKVLAEMFRSMDTIVGMLFNRLETVTFAKVKQGVQDMMHKRFEESHVGQIKTVYPSAY 182
            +KYKVLAEMFRSMDTIVGMLFNR ET+TF+KVKQGVQDMM K+FE+ +VGQIKTVYP+AY
Sbjct: 260  YKYKVLAEMFRSMDTIVGMLFNRSETITFSKVKQGVQDMMRKQFEQRNVGQIKTVYPNAY 319

Query: 183  TLRQEKNIPTFSATVKKSTYQLTVEPLIEE-ETNGARPVLSATRLLERRRAFHQNLLEIV 359
              RQEKNIPTF   VKK+ YQLT+EPL+ E +    RP LSA+RLLER++ FH++L  IV
Sbjct: 320  KYRQEKNIPTFKDGVKKTDYQLTIEPLVAEGDMLSGRPHLSASRLLERKQLFHRSLTSIV 379

Query: 360  KGHHKVFLASLSPPLVVPDDKLTRWHPKFNVDEVPNILPSDLPQPPQTEKLTTAQEVLDR 539
            K HH+VFL SL+PP++VPDDKLTRWHP+FNVDEV ++ P++LP PPQ E+LTTAQEVL +
Sbjct: 380  KQHHRVFLTSLNPPMLVPDDKLTRWHPRFNVDEVLDVTPAELPLPPQVERLTTAQEVLSK 439

Query: 540  ARSLMTPKMEKALANMALKTAE-AACSKASETPVKPAVMPIQTSSALKGVSQSLLERIRA 716
            AR L+TPKMEKALAN+ALKTAE A  +K   T    +     TS+ALKGVSQSLLERIRA
Sbjct: 440  ARGLITPKMEKALANLALKTAENAGETKNVSTEETKSTATTSTSTALKGVSQSLLERIRA 499

Query: 717  KEAQKLQAAMTRNP 758
            KEAQKLQA MTR P
Sbjct: 500  KEAQKLQAIMTRRP 513